This dataset consists of 174 WSI ovary whole slide images (WSI): 158 malignant and 16 benign. Eight of the most common, histological definable tumour types were annotated: high grade serous carcinoma (HGSC), low grade serous carcinoma (LGSC), clear cell carcinoma (CC), endometrioid adenocarcinoma (EN), metastastic serous carcinoma (MS), metastatic other (MO), serous borderline tumor (SB) and mucinous borderline tumor (MB). Also normal ovarian tissue were annotated. 11258 separate annotations were made. For the benign structures only the epithelial structures, stroma and support tissue were annotated.
Keywords: Pathology, Ovary, Cancer, Whole slide imaging, Annotated.
Sample images
Sample images with reduced image quality. Please click to preview.
Dataset information
| Cite as | Karin Lindman, Jerónimo F. Rose, Martin Lindvall, and Caroline Bivik Stadler (2019) Ovary data from the Visual Sweden project DROID doi:10.23698/aida/drov |
|---|---|
| Field | Pathology |
| Organ |
Ovary |
| Age span | 17-86 years |
| Title | Ovary data from the Visual Sweden project DROID |
| Author |
Karin Lindman Jerónimo F. Rose Martin Lindvall Caroline Bivik Stadler |
| Year | 2019 |
| DOI | doi:10.23698/aida/drov |
| Status | Completed |
| Version | 1.0 |
| Scans | 174 |
| Annotations | 11258 |
| Size | 108GB |
| Resolution | 20X single plane |
| Modality |
Scanscope AT (Aperio, US) NanoZoomer XR (Hamamatsu, Japan) NanoZoomer XRL (Hamamatsu, Japan) |
| Stain | H&E (hematoxylin and eosin) |
| Phase | |
| References |
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| Access constraints |
Restricted access |
| Copyright | Copyright 2019 Linköping University, Claes Lundström |
| Download | Please contact Karin Lindman, Claes Lundstrom, Caroline Bivik Stadler, or Joel Hedlund to request access. |
Annotation
One physician was responsible for the manual annotations controlled by a second pathologist.
Eight of the most common, histological definable tumour types were annotated: high grade serous carcinoma (HGSC), low grade serous carcinoma (LGSC), clear cell carcinoma (CC), endometrioid adenocarcinoma (EN), metastastic serous carcinoma (MS), metastatic other (MO), serous borderline tumor (SB) and mucinous borderline tumor (MB). Also normal ovarian tissue was annotated. In total 11258 separate annotations were made. For the benign structures only the epithelial structures, stroma and support tissue were annotated.
License
Copyright 2019 Linköping University, Claes Lundström
Permission to use, copy, modify, and/or distribute this data within Analytic Imaging Diagnostics Arena (AIDA) for any purpose with or without fee is hereby granted, provided that the above copyright notice and this permission notice appear in all copies, and that publications resulting from the use of this data cite the following works:
Karin Lindman, Jerónimo F. Rose, Martin Lindvall, and Caroline Bivik Stadler (2019) Ovary data from the Visual Sweden project DROID doi:10.23698/aida/drov.
THE DATA IS PROVIDED “AS IS” AND THE AUTHOR DISCLAIMS ALL WARRANTIES WITH REGARD TO THIS DATA INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR CHARACTERISTICS OF THIS DATA.