This dataset consists of 337 whole slide images (WSI) - 272 malignant from women with invasive breast cancer (HER2 neg) and 65 benign. The tumours have been classified with four SNOMED-CT categories based on morphology: invasive duct carcinoma, invasive lobular carcinoma, in situ carcinoma, and others. 4381 separate annotations have been made to segment different tissue structures connected to ontologies.
Keywords: Pathology, Breast, Cancer, Whole slide imaging, Annotated.
Sample images
Sample images with reduced image quality. Please click to preview.
Dataset information
| Cite as | Anna Bodén, Jerónimo F. Rose, Martin Lindvall, and Caroline Bivik Stadler (2019) Breast data from the Visual Sweden project DROID doi:10.23698/aida/drbr |
|---|---|
| Field | Pathology |
| Organ |
Breast |
| Age span | |
| Title | Breast data from the Visual Sweden project DROID |
| Author |
Anna Bodén Jerónimo F. Rose Martin Lindvall Caroline Bivik Stadler |
| Year | 2019 |
| DOI | doi:10.23698/aida/drbr |
| Status | Completed |
| Version | 1.0 |
| Scans | 337 |
| Annotations | 4381 |
| Size | 577GB |
| Resolution | 40X single plane, scanned in NDP format |
| Modality |
Hamamatsu NanoZoomer-XR C12000 series 2013 Hamamatsu NanoZoomer 2.0 HT C9600 series 2013 |
| Stain | H&E (hematoxylin and eosin) |
| Phase | |
| References |
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| Access constraints |
Restricted access |
| Copyright | Copyright 2019 Linköping University, Claes Lundström |
| Download | Please contact Anna Bodén, Claes Lundstrom, or Joel Hedlund to request access. |
Annotation
The breast tumours were classified with four SNOMED-CT categories based on morphology: invasive duct carcinoma, Invasive lobular carcinoma, in situ carcinoma and others. 4381 separate annotations were made to segment different tissue structures connected to ontologies. One physician were responsible for the manual annotations controlled by a second pathologist.
License
Copyright 2019 Linköping University, Claes Lundström
Permission to use, copy, modify, and/or distribute this data within Analytic Imaging Diagnostics Arena (AIDA) for any purpose with or without fee is hereby granted, provided that the above copyright notice and this permission notice appear in all copies, and that publications resulting from the use of this data cite the following works:
Anna Bodén, Jerónimo F. Rose, Martin Lindvall, and Caroline Bivik Stadler (2019) Breast data from the Visual Sweden project DROID doi:10.23698/aida/drbr.
THE DATA IS PROVIDED “AS IS” AND THE AUTHOR DISCLAIMS ALL WARRANTIES WITH REGARD TO THIS DATA INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR CHARACTERISTICS OF THIS DATA.